6YA0
Crystal structure of TSWV glycoprotein N ectodomain (Trypsin treated)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 68.820, 74.850, 81.280 |
Unit cell angles | 90.00, 103.27, 90.00 |
Refinement procedure
Resolution | 49.910 - 2.860 |
R-factor | 0.2219 |
Rwork | 0.217 |
R-free | 0.26130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6y9m |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.910 | 49.910 | 2.930 |
High resolution limit [Å] | 2.860 | 12.790 | 2.860 |
Rmerge | 0.064 | 0.031 | 1.635 |
Rmeas | 0.076 | 0.037 | 1.926 |
Total number of observations | 63929 | ||
Number of reflections | 18724 | 224 | 1401 |
<I/σ(I)> | 10.5 | 31.45 | 0.88 |
Completeness [%] | 99.6 | 97.4 | 99.9 |
Redundancy | 3.414 | 3.25 | 3.562 |
CC(1/2) | 0.998 | 0.998 | 0.437 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 289 | 28% PEG 3350 (w/v) 0.1 M tris pH 7.5 2% Ethanol |