6Y9M
Crystal structure of TSWV glycoprotein N ectodomain (sGn)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03961 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 167.200, 218.200, 145.500 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.160 - 3.400 |
R-factor | 0.2605 |
Rwork | 0.259 |
R-free | 0.28270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6y9l |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.160 | 49.160 | 3.450 |
High resolution limit [Å] | 3.400 | 20.000 | 3.400 |
Rmerge | 0.143 | 0.057 | 7.816 |
Rmeas | 0.145 | 0.058 | 7.951 |
Total number of observations | 1462177 | ||
Number of reflections | 36920 | 198 | 1543 |
<I/σ(I)> | 20.04 | 67.85 | 0.6 |
Completeness [%] | 99.7 | 91.2 | 97.8 |
Redundancy | 39.604 | 31.157 | 29.657 |
CC(1/2) | 1.000 | 0.999 | 0.432 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 289 | 25% PEG 4000 0.1M Tris pH 8.5 |