Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6Y9I

Structure of apo Chimpanzee Polyomavirus VP1

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]93
Detector technologyPIXEL
Collection date2019-04-07
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.00003
Spacegroup nameP 1
Unit cell lengths63.410, 82.190, 82.660
Unit cell angles68.61, 77.36, 77.49
Refinement procedure
Resolution46.456 - 1.900
Rwork0.171
R-free0.21340
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4fmg
RMSD bond length0.009
RMSD bond angle1.570
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0253)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.4601.950
High resolution limit [Å]1.9001.900
Rmeas0.1500.135
Number of reflections1177098633
<I/σ(I)>9.831.61
Completeness [%]99.498.9
Redundancy6.956.8
CC(1/2)0.9970.570
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7293Sodium acetate trihydrate, PEG 3,350, 1,5-Diaminopentane dihydrochloride

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon