6Y6P
Structure of Hantaan virus envelope glycoprotein Gn
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.596, 92.224, 94.033 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.344 - 1.938 |
R-factor | 0.1687 |
Rwork | 0.167 |
R-free | 0.21060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5opg |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.13) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.344 | 35.340 | 1.980 |
High resolution limit [Å] | 1.938 | 9.090 | 1.940 |
Rmerge | 0.080 | 0.040 | 1.117 |
Rmeas | 0.085 | 0.044 | 1.192 |
Rpim | 0.030 | 0.016 | 0.411 |
Total number of observations | 2627 | 18180 | |
Number of reflections | 35256 | 401 | 2248 |
<I/σ(I)> | 14.6 | 40.3 | 1.8 |
Completeness [%] | 99.6 | 98.2 | 95.6 |
Redundancy | 8.2 | 6.6 | 8.1 |
CC(1/2) | 0.999 | 0.997 | 0.655 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 25%(w/v) PEG 6000, 0.1M Hepes 7.5, 0.1M LiCl, 20% glycerol |