6Y4X
Crystal structure of p38 in complex with SR72
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-01-27 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.819, 73.999, 77.299 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.450 - 1.600 |
R-factor | 0.1702 |
Rwork | 0.168 |
R-free | 0.20430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lar |
RMSD bond length | 0.016 |
RMSD bond angle | 1.603 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 77.299 | 77.299 | 1.690 |
High resolution limit [Å] | 1.600 | 5.060 | 1.600 |
Rmerge | 0.037 | 0.308 | |
Rmeas | 0.054 | 0.041 | 0.370 |
Rpim | 0.023 | 0.017 | 0.200 |
Total number of observations | 275295 | 9856 | 23164 |
Number of reflections | 51248 | 1792 | 7310 |
<I/σ(I)> | 17.2 | 37.4 | 3.4 |
Completeness [%] | 99.9 | 99.9 | 99.4 |
Redundancy | 5.4 | 5.5 | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 277.15 | 12% PEG Smear Medium, 0.1M MES pH 6.2 |