6Y4T
Crystal structure of p38 in complex with SR63.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-27 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.079, 75.030, 77.890 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.040 - 1.980 |
R-factor | 0.201 |
Rwork | 0.198 |
R-free | 0.25080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lar |
RMSD bond length | 0.015 |
RMSD bond angle | 1.587 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.040 | 54.037 | 2.090 |
High resolution limit [Å] | 1.980 | 6.260 | 1.980 |
Rmerge | 0.037 | 0.829 | |
Rmeas | 0.080 | 0.041 | 0.911 |
Rpim | 0.033 | 0.018 | 0.372 |
Total number of observations | 5268 | 23271 | |
Number of reflections | 27680 | 982 | 3990 |
<I/σ(I)> | 11.6 | 28.4 | 2.1 |
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 5.9 | 5.4 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 277.15 | 12% PEG Smear Medium, 0.1M MES pH 6.0 |