6Y3D
X-ray structure of thermophilic C-phycocyanin from Galdiera phlegrea
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 11.2C |
Synchrotron site | ELETTRA |
Beamline | 11.2C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-02 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.96 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 60.030, 189.130, 208.130 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 94.744 - 1.800 |
Rwork | 0.221 |
R-free | 0.26820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3brp |
RMSD bond length | 0.009 |
RMSD bond angle | 1.598 |
Data reduction software | MOSFLM |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 94.744 | 1.900 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.199 | 1.800 |
Rmeas | 0.255 | |
Rpim | 0.119 | |
Number of reflections | 217082 | 30323 |
<I/σ(I)> | 2.7 | |
Completeness [%] | 92.5 | 79.6 |
Redundancy | 4.4 | 3.6 |
CC(1/2) | 0.981 | 0.061 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 0.10 M Hepes, 0.20 M magnesium chloride and 9.0 % (w/v) PEG 4000 |