6Y1N
Crystal structure of the phosphonate-modified A.5 antibody FAB fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-06-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.1060 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 86.528, 86.528, 104.874 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.258 - 2.200 |
R-factor | 0.2184 |
Rwork | 0.216 |
R-free | 0.26640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xza |
RMSD bond length | 0.003 |
RMSD bond angle | 0.756 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.196 | 1.581 |
Rmeas | 0.212 | |
Rpim | 0.081 | 0.683 |
Number of reflections | 20214 | 1715 |
<I/σ(I)> | 10.8 | 1.8 |
Completeness [%] | 97.7 | 96.8 |
Redundancy | 12.6 | 11.8 |
CC(1/2) | 0.997 | 0.450 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 292 | Ammonium citrate, pH 7.0, 1.7M |