6Y0X
Fucosylated antimicrobial peptide SB6 in complex with the lectin LecRSL from Ralstonia solanacearum at 2.4 Angstrom resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-06 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.000031 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 100.510, 100.510, 271.653 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.100 - 2.425 |
R-factor | 0.2446 |
Rwork | 0.243 |
R-free | 0.27980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ajc |
RMSD bond length | 0.008 |
RMSD bond angle | 1.045 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.7.16) |
Refinement software | PHENIX (v1.11.1-2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.100 | 2.437 |
High resolution limit [Å] | 2.425 | 2.425 |
Rmeas | 0.382 | 3.369 |
Number of reflections | 100762 | 16188 |
<I/σ(I)> | 2.39 | 1.01 |
Completeness [%] | 99.8 | 99.2 |
Redundancy | 6.7 | 6.3 |
CC(1/2) | 0.991 | 0.390 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 0.1 M Tris pH 8.5, 2.0 M Ammonium sulfate |