6XYF
Nanobody 22
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.948400 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.322, 38.685, 44.873 |
Unit cell angles | 90.00, 98.27, 90.00 |
Refinement procedure
Resolution | 30.006 - 1.111 |
Rwork | 0.125 |
R-free | 0.15280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i13.pdb |
RMSD bond length | 0.009 |
RMSD bond angle | 1.089 |
Data reduction software | XDS (ERSION Mar 15, 2019) |
Data scaling software | Aimless (0.7.4) |
Refinement software | PHENIX (1.16-3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.010 | 10.000 | 1.130 |
High resolution limit [Å] | 1.110 | 6.090 | 1.110 |
Rmerge | 0.130 | 0.074 | 0.299 |
Rmeas | 0.135 | 0.077 | 0.321 |
Rpim | 0.037 | 0.022 | 0.111 |
Total number of observations | 495655 | ||
Number of reflections | 39057 | 271 | 1095 |
<I/σ(I)> | 10.2 | ||
Completeness [%] | 96.3 | 99.6 | 55.3 |
Redundancy | 12.7 | 12.7 | 6.5 |
CC(1/2) | 0.997 | 0.996 | 0.936 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 0.1 M Bis Tris Propane 100 mM Na/K Phosphate 30 % PEG 3350 |