6XYA
Cap-binding domain of SFTSV L protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.974, 44.715, 63.515 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.220 - 1.350 |
R-factor | 0.166 |
Rwork | 0.165 |
R-free | 0.17680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6qhg |
RMSD bond length | 0.009 |
RMSD bond angle | 1.189 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17_3644) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.398 |
High resolution limit [Å] | 1.350 | 1.350 |
Rmerge | 0.031 | 0.368 |
Rmeas | 0.032 | 0.386 |
Number of reflections | 321482 | 25283 |
<I/σ(I)> | 41.6 | 6.32 |
Completeness [%] | 97.6 | 88.8 |
Redundancy | 13.2 | 11.6 |
CC(1/2) | 1.000 | 0.953 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Final concentrations of components: 16.6 mM Sodium phosphate (pH 6.5), 50mM NaCl, 6.6% (w/v) Glycerol, 4.7% (v/v) 2-Butanol, 100mM Mes (pH 6.0), 18.3% (w/v) Polyethylene glycol 4000, 1.3 mM m7GTP Protein concentration: SFTSV CBD 12.4 mg/ml |