Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6XSD

Patient-derived B2GPI

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2019-11-30
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.98
Spacegroup nameC 2 2 21
Unit cell lengths159.463, 167.566, 114.161
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.860 - 2.540
R-factor0.2253
Rwork0.225
R-free0.23320
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1qub
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.650
High resolution limit [Å]2.5405.5102.560
Rmerge0.2140.0664.294
Rmeas0.2270.0704.539
Rpim0.0750.0231.451
Number of reflections5029952494985
<I/σ(I)>6.8
Completeness [%]99.999.7100
Redundancy8.68.49.1
CC(1/2)0.9980.249
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277100mM Hepes, pH 7.5, 1.8M Ammonium Sulfate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon