6XNR
Crystal structure of Rhagium Mordax antifreeze protein
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-14 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 66.457, 91.143, 117.447 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.413 - 2.050 |
Rwork | 0.213 |
R-free | 0.25090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4dt5 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.471 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.110 |
High resolution limit [Å] | 2.050 | 2.050 |
Rpim | 0.068 | 0.519 |
Number of reflections | 45419 | 3463 |
<I/σ(I)> | 9 | 2 |
Completeness [%] | 99.7 | 99.4 |
Redundancy | 13.3 | 13.7 |
CC(1/2) | 0.998 | 0.835 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 295 | PEG monomethyl ether 5000, sodium acetate, magnesium chloride |