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6XNM

GCN4-p1 Peptide Trimer with tyrosine residue at position 16

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-003
Temperature [K]100
Detector technologyPIXEL
Collection date2017-09-01
DetectorDECTRIS PILATUS 200K
Wavelength(s)1.5418
Spacegroup nameC 1 2 1
Unit cell lengths59.553, 34.482, 46.936
Unit cell angles90.00, 100.65, 90.00
Refinement procedure
Resolution13.770 - 2.250
R-factor0.2383
Rwork0.225
R-free0.35810
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1swi
RMSD bond length0.009
RMSD bond angle1.293
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]13.7702.330
High resolution limit [Å]2.2502.250
Rmerge0.0410.090
Rmeas0.0590.127
Rpim0.0410.090
Number of reflections7950818
<I/σ(I)>20.019.6
Completeness [%]91.591.42
Redundancy1.91.9
CC(1/2)0.9960.942
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7298Crystallization drops were prepared by mixing 2 uL of stock peptide solution with 2 uL of mother liquor and allowed to equilibrate at 298 K over a well containing 500 uL of mother liquor. The stock peptide solution (total concentration 1.5 mM) was prepared by mixing 2:1 ratios of the A16 peptide with me-F16 in 10 mM potassium phosphate, 100 mM potassium chloride pH 7.0.

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PDB entries from 2024-09-04

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