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6XNL

GCN4-p1 Peptide Trimer with iodo-phenylalanine residue at position 16 (IPF-F16)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 4.2.2
Synchrotron siteALS
Beamline4.2.2
Temperature [K]100
Detector technologyCMOS
Collection date2018-01-09
DetectorRDI CMOS_8M
Wavelength(s)0.83
Spacegroup nameC 1 2 1
Unit cell lengths59.069, 34.848, 46.712
Unit cell angles90.00, 100.44, 90.00
Refinement procedure
Resolution19.850 - 2.200
R-factor0.2322
Rwork0.222
R-free0.32110
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1swi
RMSD bond length0.008
RMSD bond angle1.146
Data reduction softwareHKL-2000
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.8502.280
High resolution limit [Å]2.2002.200
Rmerge0.0710.429
Rmeas0.1000.607
Rpim0.0710.429
Number of reflections8716695
<I/σ(I)>14.322.67
Completeness [%]97.9
Redundancy1.8
CC(1/2)0.9860.462
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7298Crystallization drops were prepared by mixing 2 uL of stock peptide solution with 2 uL of mother liquor and allowed to equilibrate at 298 K over a well containing 500 uL of mother liquor. The stock peptide solution (total concentration 1.5 mM) was prepared by mixing 2:1 ratios of the A16 peptide with IPF-F16 in 10 mM potassium phosphate, 100 mM potassium chloride pH 7.0.

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PDB entries from 2024-07-10

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