6XHG
Far-red absorbing dark state of JSC1_58120g3 with bound biliverdin IXa (BV)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-11-03 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 |
Unit cell lengths | 32.220, 36.130, 75.490 |
Unit cell angles | 100.54, 95.55, 90.01 |
Refinement procedure
Resolution | 36.928 - 2.300 |
R-factor | 0.2326 |
Rwork | 0.231 |
R-free | 0.26440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | JSC1_58120g3 with 18-1 18-2 DHBV-adduct |
RMSD bond length | 0.003 |
RMSD bond angle | 0.784 |
Data reduction software | Aimless (0.7.3) |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 73.860 | 73.860 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.074 | 0.030 | 0.394 |
Rmeas | 0.105 | 0.042 | 0.557 |
Rpim | 0.074 | 0.030 | 0.394 |
Number of reflections | 12858 | 221 | 1296 |
<I/σ(I)> | 2.9 | ||
Completeness [%] | 86.8 | 86.3 | 91.6 |
Redundancy | 1.7 | 1.8 | 1.7 |
CC(1/2) | 0.992 | 0.995 | 0.719 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.1 M Ammonium Chloride, 35% (w/v) PEG 6000, 0.1 M Sodium Acetate |