6XGP
YSD1_17 major capsid protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-24 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.396, 91.994, 89.032 |
Unit cell angles | 90.00, 102.42, 90.00 |
Refinement procedure
Resolution | 30.830 - 2.600 |
R-factor | 0.2211 |
Rwork | 0.219 |
R-free | 0.25810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bqw |
RMSD bond length | 0.010 |
RMSD bond angle | 1.140 |
Data reduction software | XDS (20151015) |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER (2.6.0) |
Refinement software | BUSTER |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.010 | 2.690 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.106 | 0.734 |
Rmeas | 0.149 | 1.038 |
Rpim | 0.106 | 0.734 |
Number of reflections | 26350 | 2620 |
<I/σ(I)> | 8 | 1.4 |
Completeness [%] | 99.6 | 99.6 |
Redundancy | 2 | 2 |
CC(1/2) | 0.983 | 0.438 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293.15 | 4 % PEG3350, 20 % glycerol, 0.2 M NaBr and 0.1 M MOPS-HEPES buffer (pH 7.5) |