6XDB
Crystal structure of IRE1a in complex with G-6904
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2018-09-12 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.99999 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 68.652, 168.441, 101.676 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.523 - 2.450 |
R-factor | 0.1948 |
Rwork | 0.193 |
R-free | 0.22740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6urc |
RMSD bond length | 0.004 |
RMSD bond angle | 0.627 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.28) |
Phasing software | PHASER |
Refinement software | PHENIX (1.12-2829_final) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.523 | 43.520 | 2.580 |
High resolution limit [Å] | 2.450 | 7.750 | 2.450 |
Rmerge | 0.060 | 0.022 | 0.882 |
Rmeas | 0.065 | 0.024 | 0.957 |
Rpim | 0.026 | 0.010 | 0.369 |
Total number of observations | 4380 | 20845 | |
Number of reflections | 22097 | 777 | 3168 |
<I/σ(I)> | 13.9 | 43.7 | 1.5 |
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 6.3 | 5.6 | 6.6 |
CC(1/2) | 0.999 | 0.999 | 0.760 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.1 M Hepes pH 7.5, 42% PEG200, 1 M Lithium chloride, 3% w/v 6-Aminohexanoic acid |