6XD2
Porcine pepsin in complex with darunavir
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-11-26 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97856 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 66.245, 66.245, 290.049 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.340 - 1.900 |
R-factor | 0.1645 |
Rwork | 0.163 |
R-free | 0.19760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4pep |
RMSD bond length | 0.007 |
RMSD bond angle | 0.898 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.340 | 1.969 |
High resolution limit [Å] | 1.900 | 1.901 |
Rmerge | 0.089 | 0.253 |
Rmeas | 0.092 | 0.265 |
Rpim | 0.026 | 0.077 |
Number of reflections | 30916 | 2998 |
<I/σ(I)> | 35.71 | 10.34 |
Completeness [%] | 99.8 | |
Redundancy | 12 | |
CC(1/2) | 0.995 | 0.981 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 295 | 3.5 M Ammonium Chloride, 0.1 M sodium acetate pH 4.6 |