6XBH
Crystal structure of the SARS-CoV-2 (COVID-19) main protease in complex with inhibitor UAW247
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-05-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.987 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 113.190, 54.512, 45.129 |
Unit cell angles | 90.00, 100.02, 90.00 |
Refinement procedure
Resolution | 32.150 - 1.600 |
R-factor | 0.1759 |
Rwork | 0.173 |
R-free | 0.22070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6yb7 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.747 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.630 |
High resolution limit [Å] | 1.600 | 4.340 | 1.600 |
Rmerge | 0.068 | 0.044 | 0.500 |
Rmeas | 0.081 | 0.052 | 0.602 |
Rpim | 0.043 | 0.028 | 0.333 |
Total number of observations | 114804 | ||
Number of reflections | 33926 | 1778 | 1644 |
<I/σ(I)> | 8.8 | ||
Completeness [%] | 95.1 | 96 | 93.9 |
Redundancy | 3.4 | 3.4 | 3.1 |
CC(1/2) | 0.996 | 0.684 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 298 | 20% PEG3000, 0.1 M sodium citrate, pH 5.6 |