6XAY
Structure of a fragment of human fibronectin containing the 10th, 11th and 12th type III domains
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | C 2 2 2 |
Unit cell lengths | 125.085, 440.367, 60.474 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.400 - 2.480 |
Rwork | 0.246 |
R-free | 0.29600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dft |
RMSD bond length | 0.005 |
RMSD bond angle | 0.746 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.16) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.400 | 2.570 |
High resolution limit [Å] | 2.480 | 2.480 |
Rmeas | 0.097 | 0.504 |
Rpim | 0.033 | 0.234 |
Number of reflections | 55470 | 20331 |
<I/σ(I)> | 12.3 | 2.9 |
Completeness [%] | 92.1 | |
Redundancy | 6.8 | |
CC(1/2) | 0.998 | 0.732 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.5M (NH4)2SO4, 0.1M Citric acid pH 4.0, 30%(v/v)PEG 600, 10%(v/v) glycerol |