6X7Y
N-acetyl-glucosamine-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2019-12-07 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9615 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.240, 50.650, 79.420 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.710 - 1.000 |
R-factor | 0.1277 |
Rwork | 0.127 |
R-free | 0.14140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5j6y |
RMSD bond length | 0.016 |
RMSD bond angle | 1.682 |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.710 | 1.030 |
High resolution limit [Å] | 0.960 | 0.960 |
Rmerge | 0.063 | 1.035 |
Number of reflections | 106951 | 7708 |
<I/σ(I)> | 22.14 | |
Completeness [%] | 95.6 | |
Redundancy | 11.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7 | 298 | 0.2 M calcium chloride, 0.1 M HEPES (pH 7), 20% (v/v) polyethylene glycol 3350 and ~ 30 % (w/v) N-acetyl-glucosamine |