6X7X
mannose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2016-04-01 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 1.03318 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.299, 50.358, 79.130 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.560 - 1.300 |
R-factor | 0.1595 |
Rwork | 0.158 |
R-free | 0.18580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5j6y |
RMSD bond length | 0.014 |
RMSD bond angle | 1.666 |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.560 | 1.310 |
High resolution limit [Å] | 1.260 | 1.260 |
Rmerge | 0.302 | 0.661 |
Number of reflections | 48977 | 4287 |
<I/σ(I)> | 4.2 | |
Completeness [%] | 98.7 | |
Redundancy | 7.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7 | 298 | 0.2 M calcium chloride, 0.1 M HEPES (pH 7), 20% (v/v) polyethylene glycol 3350 and ~30 % (w/v) mannose |