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6X7X

mannose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]93
Detector technologyCCD
Collection date2016-04-01
DetectorMAR CCD 130 mm
Wavelength(s)1.03318
Spacegroup nameP 21 21 21
Unit cell lengths45.299, 50.358, 79.130
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.560 - 1.300
R-factor0.1595
Rwork0.158
R-free0.18580
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5j6y
RMSD bond length0.014
RMSD bond angle1.666
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]39.5601.310
High resolution limit [Å]1.2601.260
Rmerge0.3020.661
Number of reflections489774287
<I/σ(I)>4.2
Completeness [%]98.7
Redundancy7.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH72980.2 M calcium chloride, 0.1 M HEPES (pH 7), 20% (v/v) polyethylene glycol 3350 and ~30 % (w/v) mannose

220113

PDB entries from 2024-05-22

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