Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6X6D

Glucocorticoid Receptor DNA binding domain in complex with unmodified precursor for a modern recognition element (pre-GBS)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2016-08-16
DetectorRAYONIX MX300-HS
Wavelength(s)1.0
Spacegroup nameC 1 2 1
Unit cell lengths130.426, 39.000, 96.791
Unit cell angles90.00, 118.71, 90.00
Refinement procedure
Resolution39.456 - 2.480
R-factor0.1913
Rwork0.190
R-free0.21130
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3fyl
RMSD bond length0.005
RMSD bond angle0.662
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]39.4562.570
High resolution limit [Å]2.4802.480
Rmeas0.148
Rpim0.079
Number of reflections153071508
<I/σ(I)>14.05
Completeness [%]98.6
Redundancy3.1
CC(1/2)0.705
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5289.1550 mM Sodium cacodylate pH 6.5, 80 mM Calcium chloride, 1 % glycerol, and 8.5% PEG 400

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon