6X1X
PDZ domain from choanoflagellate GIPC (mbGIPC)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2019-05-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.977410 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 29.709, 35.301, 82.773 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.386 - 1.198 |
R-factor | 0.1678 |
Rwork | 0.167 |
R-free | 0.18900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5v6b |
RMSD bond length | 0.005 |
RMSD bond angle | 0.818 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.386 | 1.360 | 1.270 |
High resolution limit [Å] | 1.198 | 1.270 | 1.200 |
Number of reflections | 28166 | 7604 | 4522 |
<I/σ(I)> | 31.9 | 8.75 | 5.15 |
Completeness [%] | 91.4 | 93.8 | 52.9 |
Redundancy | 5.34 | 2.86 | 1.63 |
CC(1/2) | 1.000 | 0.987 | 0.973 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | 0.1 M ammonium tartrate dibasic, pH 7.0, 12% w/v PEG3350 |