6X04
Nup133 (aa55-481) from S. cerevisiae bound by VHH-SAN5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-17 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.799, 204.761, 205.833 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.680 - 2.680 |
R-factor | 0.2439 |
Rwork | 0.243 |
R-free | 0.26140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4q9t |
RMSD bond length | 0.005 |
RMSD bond angle | 0.647 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18_3845) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.680 | 2.800 |
High resolution limit [Å] | 2.680 | 2.680 |
Rpim | 0.035 | 0.684 |
Number of reflections | 100374 | 9937 |
<I/σ(I)> | 29.1 | 1.49 |
Completeness [%] | 98.7 | 99.1 |
Redundancy | 8.6 | 8.3 |
CC(1/2) | 0.999 | 0.567 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 15% PEG MME 2,000, 0.1M potassium chloride, 0.1M Tris/HCl pH 8 |