6WZC
Ni-bound structure of an engineered protein trimer, TriCyt3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.2398 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 82.460, 82.460, 53.118 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.711 - 2.195 |
R-factor | 0.1847 |
Rwork | 0.181 |
R-free | 0.21870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bc5 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.858 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14-3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.711 | 2.274 |
High resolution limit [Å] | 2.195 | 2.195 |
Rmerge | 0.744 | 0.578 |
Rmeas | 0.768 | 0.619 |
Rpim | 0.187 | 0.218 |
Number of reflections | 10934 | 1068 |
<I/σ(I)> | 2.96 | |
Completeness [%] | 99.6 | |
Redundancy | 12.7 | |
CC(1/2) | 0.887 | 0.887 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 25% PEG2000, 0.2 M CaCl2, 0.1 M Bis-Tris (pH 6.5) |