6WZA
Ni-bound structure of an engineered metal-dependent protein trimer, TriCyt1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-08 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.239840 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 82.115, 82.115, 137.517 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.346 - 2.500 |
R-factor | 0.2473 |
Rwork | 0.241 |
R-free | 0.30590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bc5 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.058 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.346 | 2.589 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.142 | 0.688 |
Rmeas | 0.145 | 0.706 |
Rpim | 0.033 | 0.159 |
Number of reflections | 19138 | 1865 |
<I/σ(I)> | 18.23 | |
Completeness [%] | 99.7 | |
Redundancy | 19.2 | |
CC(1/2) | 0.999 | 0.979 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 22.5% PEG 400, 0.2 M NaCl, 0.1 M HEPES (pH 7.5) |