6WY6
Crystal structure of S. cerevisiae Atg8 in complex with Ede1 (1220-1247)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-11 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.979 |
Spacegroup name | P 43 |
Unit cell lengths | 49.642, 49.642, 123.446 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.057 - 1.773 |
R-factor | 0.1771 |
Rwork | 0.176 |
R-free | 0.20280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2znp |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (ccp4) |
Refinement software | REFMAC (ccp4) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.060 | 1.836 |
High resolution limit [Å] | 1.773 | 1.773 |
Rmerge | 0.054 | 0.409 |
Rmeas | 0.068 | 0.586 |
Rpim | 0.032 | 0.297 |
Number of reflections | 28870 | 2848 |
<I/σ(I)> | 29.36 | |
Completeness [%] | 100.0 | 99.65 |
Redundancy | 8.8 | 7.6 |
CC(1/2) | 0.996 | 0.862 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.8 | 277.15 | 1.1 M ammonium sulfate, 0.1 M sodium acetate, pH 4.8, 0.01 M sodium iodide |