6WVX
Crystal structure of the first bromodomain of human BRD4 with benzodiazepine inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-23 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.966 |
Spacegroup name | P 1 |
Unit cell lengths | 30.430, 39.710, 57.820 |
Unit cell angles | 82.21, 75.25, 89.86 |
Refinement procedure
Resolution | 39.320 - 1.550 |
Rwork | 0.217 |
R-free | 0.24620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4z1s |
RMSD bond length | 0.009 |
RMSD bond angle | 1.594 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.368 | 1.580 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.089 | 0.531 |
Rmeas | 0.126 | 0.751 |
Rpim | 0.089 | 0.531 |
Number of reflections | 33390 | 1696 |
<I/σ(I)> | 3.2 | |
Completeness [%] | 88.7 | 90.2 |
Redundancy | 1.5 | |
CC(1/2) | 0.987 | 0.601 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.18 M Triammonium Citrate, 20% (w/v) PEG 3350 |