6WPN
Crystal structure of a putative oligosaccharide periplasmic-binding protein from Synechococcus sp. MITs9220
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2019-10-09 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 59.947, 69.525, 83.721 |
Unit cell angles | 90.00, 94.70, 90.00 |
Refinement procedure
Resolution | 41.720 - 2.290 |
R-factor | 0.2042 |
Rwork | 0.201 |
R-free | 0.24710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wpm |
RMSD bond length | 0.004 |
RMSD bond angle | 0.682 |
Data reduction software | Aimless |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | REFMAC (5) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.790 | 46.790 | 2.380 |
High resolution limit [Å] | 2.290 | 8.900 | 2.380 |
Rmerge | 0.072 | ||
Rmeas | 0.083 | ||
Rpim | 0.042 | ||
Number of reflections | 30536 | 549 | 2892 |
<I/σ(I)> | 10.5 | ||
Completeness [%] | 99.5 | 98 | 96.5 |
Redundancy | 3.8 | 3.6 | 3.6 |
CC(1/2) | 0.999 | 0.999 | 0.534 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | Ammonium sulphate (2 M), Tris (0.1 M, pH 8.5) |