6WPA
Structure of AvaR1 bound to DNA half-site
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-04-14 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.978720 |
Spacegroup name | P 42 |
Unit cell lengths | 130.522, 130.522, 180.649 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.000 - 3.090 |
R-factor | 0.2131 |
Rwork | 0.210 |
R-free | 0.26460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wp7 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.360 |
Data reduction software | HKL-2000 |
Data scaling software | autoPROC |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 3.200 |
High resolution limit [Å] | 3.080 | 3.090 |
Rmerge | 0.077 | |
Rmeas | 0.079 | |
Rpim | 0.021 | 0.338 |
Number of reflections | 55544 | 5510 |
<I/σ(I)> | 25.9 | |
Completeness [%] | 100.0 | |
Redundancy | 15.1 | |
CC(1/2) | 0.999 | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.2 M Potassium chloride, 0.01 M Magnesium chloride hexahydrate, 0.05 M Sodium cacodylate trihydrate pH 6.5, 10% w/v Polyethylene glycol 4000 with additive 40 % Formamide |