6WON
Crystal structure of acetoin dehydrogenase YohF from Salmonella typhimurium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 298 |
Detector technology | IMAGE PLATE |
Collection date | 2018-12-11 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.549, 114.171, 219.342 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.490 - 2.130 |
R-factor | 0.161 |
Rwork | 0.160 |
R-free | 0.20660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ux3 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.795 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.15_3448) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.160 |
High resolution limit [Å] | 2.120 | 2.120 |
Rmerge | 0.061 | 0.550 |
Rpim | 0.039 | 0.244 |
Number of reflections | 103094 | 5055 |
<I/σ(I)> | 17.35 | 2.05 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 5.8 | |
CC(1/2) | 0.865 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 0.2 M lithium sulfate monohydrate, 25% (w/v) PEG3350, 0.1 M bis-Tris pH 6.5, cryoprotectant: paratone |