6WJR
Apo structure of the FMN riboswitch aptamer domain in the presence of sulfate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.033175 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 73.635, 36.468, 205.524 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.140 - 2.700 |
R-factor | 0.2222 |
Rwork | 0.221 |
R-free | 0.25760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3f2q |
RMSD bond length | 0.006 |
RMSD bond angle | 1.385 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.18rc5_3822) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.140 | 42.140 | 2.770 |
High resolution limit [Å] | 2.700 | 12.070 | 2.700 |
Rmerge | 0.089 | 0.043 | 4.793 |
Rmeas | 0.104 | 0.051 | 5.447 |
Total number of observations | 64444 | ||
Number of reflections | 15928 | 209 | 1168 |
<I/σ(I)> | 8.16 | 21.58 | 0.33 |
Completeness [%] | 99.0 | 89.7 | 99.6 |
Redundancy | 4.046 | 3.177 | 4.294 |
CC(1/2) | 0.998 | 0.999 | 0.138 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M sodium acetate, pH 4.6, 0.2 M ammonium sulfate, and 26 % PEG 3350 |