6WGD
Crystal structure of a 6-phospho-beta-glucosidase from Bacillus licheniformis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-04-18 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.98 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 98.272, 98.272, 285.734 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.425 - 2.200 |
R-factor | 0.2117 |
Rwork | 0.210 |
R-free | 0.24410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ipl |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.140 | 49.140 | 2.240 |
High resolution limit [Å] | 2.200 | 11.430 | 2.200 |
Rmerge | 0.139 | 0.067 | 1.540 |
Rmeas | 0.153 | 0.076 | 1.696 |
Rpim | 0.065 | 0.033 | 0.704 |
Total number of observations | 456034 | 3295 | 25655 |
Number of reflections | 82240 | 697 | 4485 |
<I/σ(I)> | 7.7 | 20.4 | 1.5 |
Completeness [%] | 99.9 | 98.7 | 99.8 |
Redundancy | 5.5 | 4.7 | 5.7 |
CC(1/2) | 0.996 | 0.997 | 0.860 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 15% PEG4000, 0.1 M ammonium sulphate, and 0.1 M Tris, pH 7.0 |