6WAJ
Crystal structure of the UBL domain of human NLE1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 35.546, 35.546, 205.994 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.330 - 1.900 |
R-factor | 0.2491 |
Rwork | 0.248 |
R-free | 0.25420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dtc |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.200 | 41.200 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.067 | 0.050 | 0.880 |
Rmeas | 0.069 | 0.051 | 0.903 |
Rpim | 0.016 | 0.013 | 0.196 |
Total number of observations | 132701 | 1251 | 8893 |
Number of reflections | 6917 | 105 | 428 |
<I/σ(I)> | 21.7 | 41.4 | 3.2 |
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 19.2 | 11.9 | 20.8 |
CC(1/2) | 0.999 | 0.999 | 0.930 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 2.5 M ammonium sulfate, 0.1 M Tris |