6W9C
The crystal structure of papain-like protease of SARS CoV-2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-18 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 190.786, 110.280, 64.069 |
Unit cell angles | 90.00, 96.22, 90.00 |
Refinement procedure
Resolution | 43.680 - 2.700 |
R-factor | 0.2372 |
Rwork | 0.235 |
R-free | 0.27910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5y3q |
RMSD bond length | 0.005 |
RMSD bond angle | 1.355 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.680 | 43.680 | 2.750 |
High resolution limit [Å] | 2.700 | 7.320 | 2.700 |
Rmerge | 0.140 | 0.058 | 0.585 |
Rmeas | 0.173 | 0.071 | 0.769 |
Rpim | 0.099 | 0.040 | 0.492 |
Number of reflections | 20799 | 1163 | 679 |
<I/σ(I)> | 4.9 | ||
Completeness [%] | 57.3 | 62.6 | 38.4 |
Redundancy | 2.5 | 2.9 | 1.9 |
CC(1/2) | 0.991 | 0.566 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289 | 0.2 M magnesium acetate, 10% PEG 8000 |