6W3D
Rd1NTF2_05 with long sheet
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-02-28 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.999995 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 60.076, 30.498, 61.099 |
Unit cell angles | 90.00, 97.84, 90.00 |
Refinement procedure
Resolution | 28.275 - 1.380 |
R-factor | 0.1855 |
Rwork | 0.182 |
R-free | 0.21580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Computational design model |
RMSD bond length | 0.019 |
RMSD bond angle | 1.549 |
Data reduction software | XDS (Jun 17, 2015) |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | PHENIX (dev-3026) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.275 | 28.270 | 1.400 |
High resolution limit [Å] | 1.380 | 7.560 | 1.380 |
Rmerge | 0.037 | 0.019 | 1.909 |
Rmeas | 0.042 | 0.022 | 2.175 |
Rpim | 0.020 | 0.011 | 1.030 |
Total number of observations | 495 | 4992 | |
Number of reflections | 22794 | 136 | 1144 |
<I/σ(I)> | 18.3 | 61.1 | 0.8 |
Completeness [%] | 99.8 | 85 | 100 |
Redundancy | 4.4 | 3.6 | 4.4 |
CC(1/2) | 1.000 | 0.999 | 0.306 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293.15 | Protein at 56mg/ml, then 1:1 dilution in 0.09M Sodium fluoride; 0.09M Sodium bromide; 0.09M Sodium iodide, 0.1M Tris/BICINE pH 8.5, 50% v/v of 40% v/v PEG 500 MME; 20 % w/v PEG 20000 |