6W2O
Crystal structure of uroporphyrinogen III decarboxylate (hemE) from Stenotrophomonas maltophilia
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-02-13 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | .97872 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 103.690, 103.690, 74.720 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.900 - 1.550 |
R-factor | 0.1551 |
Rwork | 0.154 |
R-free | 0.17140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4wsh |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.18rc2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.900 | 44.900 | 1.590 |
High resolution limit [Å] | 1.550 | 6.930 | 1.550 |
Rmerge | 0.059 | 0.032 | 0.527 |
Rmeas | 0.066 | 0.036 | 0.582 |
Total number of observations | 366930 | ||
Number of reflections | 67246 | 797 | 4958 |
<I/σ(I)> | 14.21 | 27.25 | 3.15 |
Completeness [%] | 99.7 | 95.7 | 100 |
Redundancy | 5.457 | 4.88 | 5.547 |
CC(1/2) | 0.998 | 0.998 | 0.884 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 287 | StmaA.01152.a.B1.PW38744 at 20.4 mg/mL against JCSG+ condition G11: 0.1 M BisTris pH 5.5, 2.0 M ammonium sulfate, supplemented with 20% ethylene glycol as cryo-protectant |