6W1A
Crystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2 bound to DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-08-05 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 1.18076 |
Spacegroup name | P 65 |
Unit cell lengths | 110.269, 110.269, 173.984 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.570 - 2.800 |
R-factor | 0.2356 |
Rwork | 0.234 |
R-free | 0.26430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4yv6 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.850 |
High resolution limit [Å] | 2.800 | 7.590 | 2.800 |
Rmerge | 0.102 | 0.038 | 1.518 |
Rmeas | 0.109 | 0.041 | 1.619 |
Rpim | 0.038 | 0.014 | 0.563 |
Number of reflections | 29582 | 1507 | 1468 |
<I/σ(I)> | 10.5 | ||
Completeness [%] | 99.9 | 99 | 100 |
Redundancy | 8.3 | 8.1 | 8.3 |
CC(1/2) | 0.999 | 0.999 | 0.580 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 298 | 100 mM trilithium citrate and 24% PEG 3,350 |