6W0P
Putative kojibiose phosphorylase from human microbiome
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-16 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.215, 200.451, 293.122 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.440 - 2.230 |
R-factor | 0.2034 |
Rwork | 0.200 |
R-free | 0.24590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1h54 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.453 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 49.440 | 2.270 |
High resolution limit [Å] | 2.230 | 6.050 | 2.230 |
Rmerge | 0.092 | 0.039 | 0.665 |
Rmeas | 0.101 | 0.043 | 0.734 |
Rpim | 0.041 | 0.017 | 0.304 |
Number of reflections | 171175 | 9756 | 7804 |
<I/σ(I)> | 6.4 | ||
Completeness [%] | 92.7 | 99 | 85.8 |
Redundancy | 5.9 | 6.4 | 5.5 |
CC(1/2) | 0.999 | 0.548 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 289 | 9% PEG 3350, 0.1 M sodium malonate, 0.01 calcium chloride |