6VVE
Legionella pneumophila Lpg2603 kinase bound to IP6, Mn2+, and ADP
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SEALED TUBE |
| Source details | RIGAKU MICROMAX-003 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-01-19 |
| Detector | RIGAKU HyPix-6000HE |
| Wavelength(s) | 1.5414 |
| Spacegroup name | P 21 21 2 |
| Unit cell lengths | 52.535, 77.073, 72.557 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.850 - 1.850 |
| R-factor | 0.2108 |
| Rwork | 0.209 |
| R-free | 0.23580 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6vvc |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.638 |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-3000 |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.17.1) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 29.850 | 1.970 |
| High resolution limit [Å] | 1.770 | 1.770 |
| Rmerge | 0.076 | 0.410 |
| Rpim | 0.066 | 0.395 |
| Number of reflections | 22536 | 2259 |
| <I/σ(I)> | 14.9 | 1.4 |
| Completeness [%] | 76.6 | 29 |
| Redundancy | 3.2 | 1.2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4 | 293 | 0.1 M citric acid, 7% MKPD, 0.03 M sodium chloride, 0.5 mM IP6, 1 mM manganese chloride, 1 mM APS-PNP, 35% ethylene glycol |
