6VUF
Crystal structure of BRD4 bromodomain 1 with N-methylpyrrolidin-2-one (NMP) derivative 7h (4-(1-methyl-5-oxopyrrolidin-3-yl)-N-propylbenzenesulfonamide)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
| Synchrotron site | Australian Synchrotron |
| Beamline | MX1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2017-05-05 |
| Detector | ADSC QUANTUM 210r |
| Wavelength(s) | 0.95370 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 36.030, 79.205, 46.819 |
| Unit cell angles | 90.00, 92.82, 90.00 |
Refinement procedure
| Resolution | 40.270 - 1.590 |
| R-factor | 0.2183 |
| Rwork | 0.216 |
| R-free | 0.26940 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5dw2 |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.951 |
| Data reduction software | XDS |
| Data scaling software | SCALA |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 46.760 | 1.680 |
| High resolution limit [Å] | 1.590 | 1.590 |
| Rmerge | 0.079 | 0.642 |
| Rpim | 0.044 | 0.357 |
| Number of reflections | 35273 | 5067 |
| <I/σ(I)> | 10.3 | 1.9 |
| Completeness [%] | 99.8 | |
| Redundancy | 4.2 | |
| CC(1/2) | 0.997 | 0.765 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 277.15 | 0.2 M sodium nitrate, 35% PEG3350, 6% v/v ethylene glycol |






