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6VU7

Crystal structure of YbjN, a putative transcription regulator from E. coli

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2018-03-09
DetectorRIGAKU RAXIS IV
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths54.462, 110.891, 59.924
Unit cell angles90.00, 116.71, 90.00
Refinement procedure
Resolution29.930 - 2.590
R-factor0.2403
Rwork0.237
R-free0.29460
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5fr7
RMSD bond length0.003
RMSD bond angle0.596
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.15_3448)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.640
High resolution limit [Å]2.5902.600
Rmerge0.1260.597
Rpim0.0830.536
Number of reflections19643961
<I/σ(I)>13.592.68
Completeness [%]99.7
Redundancy3.2
CC(1/2)0.536
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.22980.1 M diammionium citrate, 0.1 M MES pH 5.2, 26% (w/v) PEG3350, 2% isopropanol

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