6VT3
Naegleria gruberi RNA ligase K326A mutant apo
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-25 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.700, 65.369, 93.836 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.776 - 1.844 |
R-factor | 0.2131 |
Rwork | 0.209 |
R-free | 0.26250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cot |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 1.880 |
High resolution limit [Å] | 1.844 | 5.010 | 1.844 |
Rmerge | 0.067 | 0.028 | 1.048 |
Rmeas | 0.075 | 0.032 | 1.156 |
Rpim | 0.032 | 0.014 | 0.482 |
Number of reflections | 28480 | 1523 | 1421 |
<I/σ(I)> | 14.3 | ||
Completeness [%] | 99.7 | 96.8 | 100 |
Redundancy | 5.1 | 4.7 | 5.2 |
CC(1/2) | 0.999 | 0.705 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | The NgrRnlK326A protein sample (21.4 mg/ml) was mixed with equal volume (1 ul) of 0.1 M HEPES pH 6.5, 25% PEG6000. |