6VPA
Scabin (N110A) toxin from Streptomyces scabies
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-12-13 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 88.370, 60.730, 37.910 |
Unit cell angles | 90.00, 99.43, 90.00 |
Refinement procedure
Resolution | 43.588 - 1.500 |
R-factor | 0.1453 |
Rwork | 0.144 |
R-free | 0.17150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5daz |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.590 | 1.554 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.042 | 0.346 |
Rmeas | 0.048 | 0.402 |
Rpim | 0.023 | 0.199 |
Number of reflections | 31488 | 2954 |
<I/σ(I)> | 20.16 | 3.79 |
Completeness [%] | 99.0 | 93 |
Redundancy | 4.5 | 3.9 |
CC(1/2) | 0.998 | 0.925 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 14% PEG400, 0.1 M MES, pH 6.5 |