6VMT
Leishmania major Programmed Cell Death Protein 5 Homolog
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-03-11 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.95373,0.97962,0.97949 |
Spacegroup name | H 3 2 |
Unit cell lengths | 115.386, 115.386, 58.628 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 25.296 - 2.501 |
Rwork | 0.222 |
R-free | 0.27270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6iqo |
RMSD bond length | 0.010 |
RMSD bond angle | 1.605 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.7.4) |
Phasing software | MoRDa |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.296 | 25.296 | 2.600 |
High resolution limit [Å] | 2.500 | 9.010 | 2.500 |
Rmerge | 0.114 | 0.074 | 6.236 |
Rmeas | 0.122 | 0.078 | 6.752 |
Rpim | 0.040 | 0.025 | 2.424 |
Number of reflections | 4643 | 122 | 306 |
<I/σ(I)> | 11.3 | ||
Completeness [%] | 87.8 | 95.2 | 53.5 |
Redundancy | 8.9 | 8.9 | 6.9 |
CC(1/2) | 0.998 | 0.999 | 0.264 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.6 | 300 | 1.5 M K2HPO4 |