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6VHX

Klebsiella oxytoca NpsA N-terminal subdomain in complex with 3-hydroxyanthranilyl-AMSN

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-25
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.03322
Spacegroup nameP 1 21 1
Unit cell lengths77.073, 60.233, 79.960
Unit cell angles90.00, 101.55, 90.00
Refinement procedure
Resolution60.790 - 1.700
R-factor0.1925
Rwork0.191
R-free0.21740
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6vhw
RMSD bond length0.008
RMSD bond angle0.933
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwarePHENIX (1.15_3459)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]60.7901.730
High resolution limit [Å]1.7001.700
Rmeas0.1012.322
Rpim0.0390.900
Number of reflections733383912
<I/σ(I)>11.90.8
Completeness [%]92.9100
Redundancy6.66.6
CC(1/2)0.9990.366
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293well solution: 100 mM HEPES pH 7.5, 150 mM KBr, 30% w/v PEG3350 protein solution (15 mg/mL): 50 mM HEPES pH 8.0, 150 mM NaCl, 0.2 mM TCEP hanging drops: 1 uL protein solution, 1 uL well solution

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PDB entries from 2024-11-06

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