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6VHE

FphF, Staphylococcus aureus fluorophosphonate-binding serine hydrolases F, KT130 bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron siteAustralian Synchrotron
BeamlineMX1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-21
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.954
Spacegroup nameP 61 2 2
Unit cell lengths87.126, 87.126, 454.920
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution49.240 - 1.940
R-factor0.1701
Rwork0.168
R-free0.20860
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6vh9
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (dev-3699)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.24049.2401.980
High resolution limit [Å]1.9409.6901.940
Rmerge0.1520.0331.957
Rmeas0.1540.0331.987
Rpim0.0240.0060.342
Total number of observations25358145969
Number of reflections776168094466
<I/σ(I)>23.187.52.2
Completeness [%]100.099.499.5
Redundancy39.331.332.7
CC(1/2)1.0001.0000.804
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5289.150.25 uL ~6.6 mg/ml FphF+KT130 (0.2 mM KT130, 20% DMSO, 8 mM HEPES pH 7.5, 40 mM NaCl) were mixed with 0.2 uL of reservoir solution. Sitting drop reservoir contained 50 uL of 0.8 M sodium formate, 10% w/v PEG 8000, 10% w/v PEG 1000 and 0.1 M HEPES pH 7.0. Crystals were soaked for ~20 seconds in 75% reservoir solution and 25% glycerol prior to freezing in liquid nitrogen

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PDB entries from 2024-07-17

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