6VH6
Crystal structure of Epstein-Barr Virus Nuclear Antigen-1, EBNA1, bound to fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.516, 68.344, 69.687 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.997 - 1.300 |
Rwork | 0.150 |
R-free | 0.16080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vhi |
RMSD bond length | 0.009 |
RMSD bond angle | 1.007 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.320 |
High resolution limit [Å] | 1.300 | 3.530 | 1.300 |
Rmerge | 0.061 | 0.050 | 0.800 |
Rmeas | 0.066 | 0.054 | 0.946 |
Number of reflections | 69927 | 3655 | 3190 |
<I/σ(I)> | 26.4 | 33.1 | 1.03 |
Completeness [%] | 99.1 | 96.3 | 91.9 |
Redundancy | 6.4 | 6.5 | 3.1 |
CC(1/2) | 0.996 | 0.557 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 50 mM MES pH 6.5, 0-100 mM NaCl, 10 mM DTT |